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- 2Fo-Fc map
- 2Fo-Fc map
- example of creating a
- 3Fo-2Fc map
- ACCEPT statement
- ADD command
- AGARWAL command
- AGARWAL command
- example of
- Amsom|seeFile formats
- APPLY command
- ASSUME statement
- Asymmetric units
- correcting coefficients
- in real space
- in reciprocal space
- ATOMx statement
- Averaging maps
- Calculating `calculated' map
- Calculating Fc's
- Calculating Patterson map
- CATEGORY statement
- CELL statement
- centric zone
- CHAIN statement
- CHANGE command
- CLUSTER statement
- Coefficients
- converting to map
- converting to peaks
- COMBINE statement
- Conjugate direction|seePreconditioned conjugate gradient
- Conjugate gradient
- CONNECT statement
- CONSTANT statement
- CONTACT Statement
- Control program|seeShift
- Convert(program)
- Coordinates
- converting to coefficients
- converting to map
- COPY command
- CRVAC statement
- CRVBC statement
- CRVC statement
- CURVATURE command
- in Geometry
- in NCS
- in Rfactor
- DANGLING statement
- DIAMOND command
- Diamond|seeFile formats
- Difference Patterson map
- DRVx statement
- Dscreen(program)
- DSN2 command
- EXCLUDE statement
- FC statement
- File formats
- Amsom
- producing
- Diamond
- limitations
- producing
- reading
- DSN6 map
- Definition of
- Frodo DSN2
- Definition of
- limitations
- producing
- reading
- Frodo DSN6
- producing
,
- Hendrickson
- limitations
- producing
- reading
- PDB
- limitations
- producing
- reading
- REFI geometry
- conversion to
- TNT ATOMx
- Definition of
- producing
- TNT HKL
- Definition of
- producing
,
- reading|seeFILE statement
- TNT MAP
- Definition of
- producing
,
- reading|seeFILE statement
- TNT PACKED
- Definition of
- producing
,
- reading|seeFILE statement
- FILE statement
,
,
- Fixing parameters
- Fo-Fc map
- Fo-Fc map
- example of creating a
- finding peaks in
- Fo-Fo map
- Fo-Fo map
- example of creating a
- finding peaks in
- FORMFACTOR statement
- FO statement
- Fourier(program)
- Frodo DSN2|seeFile formats
- Frodo DSN6|seeFile formats
- FUNCTION command
- in Geometry
- in NCS
- in Rfactor
- FUNCVAL statement
- Gather_map(program)
- gather_map script
- GATHER command
- Geometry(program)
- Geometry(program)
- example in long loop
,
- example in short loop
- GEOMETRY statement
- Gradient/curvature
- GRADIENT command
- in Geometry
- in NCS
- in Rfactor
- GRID statement
- HENDRICKSON command
- Hendrickson|seeFile formats
- INCLUDE command
- JIGGLE command
- LATTICE statement
- LINK statement
- Long loop
,
,
- Map
- converting to coefficients
- finding peaks in
- ncs averaging
- MAXSHIFT statement
- Minimization method
- conjugate direction|seePreconditioned
conjugate gradient
- conjugate gradient
- gradient/curvature
- preconditioned conjugate gradient
- steepest descent
- Module
- creating you own
- Crystallographic
- definition
- Noncrystallographic symmetry
- Phase
- Phase
- example in long loop
- example in short loop
- Real space
- Real space
- example in long loop
- example in short loop
- Rotation function
- Rotation function
- example in long loop
- example in short loop
- Stereochemistry
- MOSES option
- NCS(program)
- NCS(program)
- example in long loop
,
- example in short loop
- ncs averaged map
- ncs averaged map
- producing
- NORMAL_MATRIX command
- example of
- in Rfactor
- OPERATOR statement
- OPTION statement
- Overlay(program)
- Overlay(program)
- arbitrary transformation
- superimposing Bchl rings
- superimposing two chains
- symmetry expansion
- OVERLAY command
- Patterson map
- calculating
- pdb2dsn2 script
- PDB command
- PDB|seeFile formats
- Peak picking
- Preconditioned conjugate gradient
- PUNCH command
- general usage
- in Convert
- in Fourier
- in Gather_map
- in NCS
- in Overlay
- in Rfactor
- in Solvent
- RENAME command
,
- REPORT
- FILE command
- GEOMETRY command
- RFACTOR command
- SPACEGROUP command
,
- STRUCTURE command
- SYMMETRY command
- report_geo script
- RESIDUE statement
- RESOLUTION statement
- Rfactor(program)
- Rfactor(program)
- example in long loop
,
- example in short loop
- example of AGARWAL command
- example of NORMAL_MATRIX command
- Rigid body refinement
- Rigid Body Refinement
- and water
- RMSTEP statement
- Scaling Fo's and Fc's
- Scaling Fo's and Fc's
- restricting scale parameters
- SCATTER command
- SCREEN command
- in Dscreen
- in Geometry
- in NCS
- script
- gather_map
- pdb2dsn2
- report_geo
- tnt_cycle_con_ncs
- tnt_cycle_ncs
- SELECT statement
- SET statement
- in Rfactor
- in Solvent
- Shift(program)
- Shift(program)
- example in long loop
- example in short loop
- Short loop
,
,
- SIM statement
- Solvent(program)
- Solvent(program)
- creating a flattened map
- creating an envelope
- Solvent flattened map
- producing
- Solvent flattening|seeSolvent(program)
- Space groups
- implemented
- Steepest descent
- Superimposing models|seeOverlay(program)
- TARGET statement
- tnt_cycle_con_ncs script
- tnt_cycle_ncs script
- TNT ATOMx|seeFile formats
- TNT HKL|seeFile formats
- TNT MAP|seeFile formats
- TNT PACKED|seeFile formats
- TRANSFORMATION statement
- VERBOSE option
- in Fourier
- in Gather_map
- in Shift
- in Solvent
- Wang envelope
- producing
- Wang envelope|seeSolvent(program)
- WEIGHT statement
- WEIGHT statement
- in Geometry
- in NCS
- in Rfactor
- Wilson B Factor
Dale Edwin Tronrud
Thu Jul 6 23:24:57 PDT 2000