Refinement Package Utilities

There are several utility programs distributed with this refinement package. They are of variable quality and usefulness and not all are described in this document. The programs described are:

• CONVERT
  • Conversion Limitations
    • Residue Names
    • Atom Types
    • Multiple Chains
    • Chain Breaks and Extra Links
    • DNA Connectivity
  • Keywords for Inferring the Sequence
  • Unique Keywords for Specifying Data
  • Command Statements
  • Program Operation
• DSCREEN
  • Command Statements
• FOURIER
  • Options
  • Unique Input Statements
  • Command Statements
    • Picking Peaks from a Map
• GATHER_MAP
  • Options
  • Unique Input Statements
  • Command Statements
  • Program Operation
• OVERLAY
  • Unique Input Statements
  • Command Statements
  • Program Operation
    • Superimposing ncs Related Chains
    • Superimposing Residues within a Model
    • Symmetry Expansion
    • Applying Arbitrary Transformations
• SOLVENT
  • Options
  • Unique Input Statements
  • Command Statements
  • Program Operation