Contents

• Contents
• General
  • Introduction
  • Latest News and Bug Report
  • Distribution
  • Acknowledgments
• Installing ARP/wARP
• Using ARP/wARP
  • Applications
  • Model and Data Requirements
  • Limitations
  • Automated Scripts
  • Preparing for ARP/wARP
  • Killing Jobs
  • Setting Things Up With arp_warp_setup.sh
  • Using Molecular Replacement Solutions (#1)
  • Density Modification (#2,#3)
  • Running ARP/wARP for Auto-Building (#4)
  • Sequence Docking and Side Chain Building (#4)
  • Solvent Building (#5)
  • ARP/wARP and SHELXL (#5)
  • Ab Initio Solution of Metalloproteins (#6)
  • ARP/wARP Output Files
  • Supplementary Use of ARP/wARP
  • I Hate Automated Scripts
• ARP/wARP Keywords
  • Short Introduction
  • Examples
  • The Keywords
  • You Want More?
• On-Line Help
• Monitoring and Troubleshooting
  • Input Processing
  • Output
  • Viewing ARP/wARP Log Files
  • Checking Convergence
  • Crashing Scripts
• Author-Abuse Information
• Bibliography