The script warp_solve.sh will take care of everything. The only requirement is
that you provide the heavy atom positions in Brookhaven format, these should be placed
in a file called heavy.warp.
A possible heavy.warp might look like this:
ATOM | 51 SG CYS X | 6 | 0.217 | 0.120 | 8.404 | 1.00 | 5.21 | 8RXN 92 | |
ATOM | 71 SG CYS X | 9 | 3.812 | 0.666 | 8.019 | 1.00 | 6.22 | 8RXN 112 | |
ATOM | 306 SG CYS X | 39 | 2.881 | -2.301 | 9.553 | 1.00 | 5.36 | 8RXN 347 | |
ATOM | 326 SG CYS X | 42 | 2.226 | 0.925 | 11.274 | 1.00 | 6.36 | 8RXN 367 | |
ATOM | 399 FE FE X | 55 | 2.222 | -0.095 | 9.294 | 1.00 | 5.14 | 8RXN 440 |
Notice that this follows standard PDB file conventions except that the CRYST and
SCALE cards are not needed here (and should not be in there).
Run warp_solve.sh and hope for the best...