ANALYZE TRAJECTORY (ANATRA)
Introduction.
Initializing the setup of the anatra menu (WADINI)
Initializing the script (WADISC)
WADSSC (shoing the script)
Run the script (WADEXE)
Evaluate the results of a previous run of the script (WADANA)
Using DSSP to evaluate geometrical properties (WADSSP)
Following the secondary structure as a function of time (WADHST)
Following a inter atomic distance through time (WADDIS)
Following an angle through time (WADANG)
Following a torsion angle through time (WADTRS)
Following a hydrogen bond through time (WAD1HB)
Following a phi/psi angle through time (WAD1PP)
Following the radius of gyration as a function of time (WADGYR)
Following backbone-backbone hydrogen bonds as a function of time (WADHBO)
Following dihedral angles as a function of time (WADDIH)
Following solvent accessible surface as a function of time (WADACC)
Calculating the RMS of positional fluctuations (WADFLC)
Isolating one frame out of a trajectory (WADGRO)
Do most of the fast-to-check overall analyses (WADALL)