Graphics enhancement options (GRAEXT)
Introduction.
Special residue displaying options
Putting selected residue types the screen (GRAAA)
Putting side chains of selected residue types the screen (GRAAAS)
Ball and stick models (PLUTO)
Ball and stick models (PLUTOS)
marking an atom with an icosahedron (ICOATM)
Special graphics objects
Axis system (AXIS)
Wire frame around crystallographic cell (CELL)
Wire frames around crystallographic cells (CELLS)
Connecting atoms with a line (LINATM)
Making a dotted sphere around one atom (DOTATM)
Putting arrows at the screen (ARROW)
Bend arrows (BARROW)
Turned arrows (TARROW)
Options to highlight helices
Cylinders through helices (HELLIN)
Cylinders through helices (HELCYL)
Cylinders through helices plus trace (HELCA)
Atomic contact related options
Showing contacts to basic and acidic atoms (CONCHG)
Residue contact plot (CATSCP)
User created items
Reading lines from a file (LINFIL)
Reading dots from a file (DOTFIL)
Reading general graphics commands from a file (ALLFIL)
Example
The ALLFIL keyword (ITEM)
The ALLFIL keyword (LINE)
The ALLFIL keyword (ARROW)
The ALLFIL keyword (CIRCLE)
The ALLFIL keyword (WHEEL)
The ALLFIL keyword (PLANE)
The ALLFIL keyword (DASH)
The ALLFIL keyword (RESIDUE)
The ALLFIL keyword (LINATOM)
The ALLFIL keyword (CALPHA)
The ALLFIL keyword (DOT)
The ALLFIL keyword (BALL)
The ALLFIL keyword (CROSS)
The ALLFIL keyword (CONE)
The ALLFIL keyword (HAT)
The ALLFIL keyword (TRICONE)
The ALLFIL keyword (TEXT)
The ALLFIL keyword (MOLLAB)
The ALLFIL keyword (CENTER)
The ALLFIL keyword (SCALE)
The ALLFIL command (END)
Other commands
Drawing ribbon plots for database entries (LOOPSP)
Drawing alpha carbon tracings for database entries (LOOPCA)
Solid filled postscript ribbon plot (SPLPST)
Solid filled postscript ribbon plot (SPLPSL)
Draw ellips around a residue range (PLANET)
Other surfaces (PLUTOP)
Draw colour circle for hardware testing (COLTST)
Parameter for the GRAEXT menu (PARAMS)
Scale factor for arrows (ARRFAC)
Number of sides of an arrow (ARRLIN)
Colour of arrow (ARRCOL)
Length of arrow point (ARRLNP)
Length of arrow base (ARRLNS)
Thickness of arrow point (ARRTHP)
Thisckness of arrow base (ARRTHS)
Radius of PLUTO atomic spheres (RADIUS)
Radius of the PLUTO sticks representing bonds (STICK)
Number of lines making up the PLUTO bond sticks (LINES)