Using the graphics (GRAFIC)
Introduction.
Interaction via the mouse
The pickable bar at the right of the screen
(WAIT)
(NOID)
(INIT)
(NEIM)
(YES)
(NO)
(CONT)
(LINE)
(FBRT)
(DIST)
(ANGL)
(TANG)
(NAYB)
(MOVE)
(REFI)
(TORS)
(M1 - M4)
(ROCK)
(STER)
(SHEL)
(CHAT)
(RSET)
(arrow buttons)
(MOV+)
(MOV-)
(VEL)
(ANG)
(SLAB)
(SPHR)
(CHAR)
(HELP)
The pick buttons in the bottom bar
Pulldown menus
The privat menu
Manipulating the pulldown menus
The graphics menus
Graphics configuration
X11 configuration: some environment variables
Initial size of the X11 WHAT IF window (WIFSIZE)
Line width of X11 WHAT IF lines (WIFLW)
Graphics mode for X11 WHAT IF
Configuring GL based machines
Background colour
Direct action mode (DIRECT)
Controlling the graphics screen in WHAT IF
Pass control to the graphics screen (GO)
Remove all objects (INIGRA)
Remove one object (INIOBJ)
Displaying atoms, residues, molecules
Displaying protons
Display hydrogens (HYDON)
Dont display hydrogens (HYDOFF)
Showing the whole soup (SHOTOT)
Showing all residues (SHOALL)
Displaying multiple zones (ZONES)
Showing alpha carbons (GRACA)
Showing the back bone (GRABB)
Showing sidechains (GRASCH)
Draw alpha carbons plus sidechains (CASCH)
Drawing a sphere (SPHERE)
Drawing a sphere in a zone (SPHZON)
Creating a cylinder and arrow plot (SPLINE)
Showing the accessible surface (GRAACC)
Showing a vanderdot surface (GRAVDD)
Showing potential water positions (POTH2O)
Showing one cluster (GRACLU)
Showing salt bridges (GRASBR)
Other graphics options
Drawing double bonds (DBLBND)
Drawing dashed residues (DSHBND)
Removing the working model (NOMODL)
Remove from direct mode (UNDISP)
Plotting options
Manipulating viewing parameters
Centering the display (ACON)
Centering the display (CENTER)
View optimalisation (OPTVIE)
Dictating the view parameters (SETVIE)
Requesting view parameters (SHOVIE)
Set side by side stereo mode (CROSS)
Other commands
Flipping back and forth between MOL-objects (TOGGL2)
Changing the linewidth (LINEWI)
Changing the viewing angle (ROTY+6)
Changing the viewing angle (ROTY-6)
Restricting the rotation directions (XONLY)
Restricting the rotation directions (YONLY)
Restricting the rotation directions (ZONLY)
Undoing XONLY or YONLY (NOONLY)
Activating more commands (MORE)