Building proteins (BUILD)

• Introduction.
• Topology file
• Adding amino acids
  • Introduction
  • Start a new protein (INIBLD)
  • Extent a protein N-terminal (NBLD)
  • Extent a protein C-terminal (CBLD)
  • Grow a protein C-terminal (CBLDS)
  • Fil a gap (FILGAP)
• Building from only the sequence
  • Build from sequence file (NEWBLD)
  • Optimize cys-cys bridges (OPTCYS)
• Building in density (DENFIT)
• Building in density (DENFTS)
• Parameters for the build menu (PARAMS)
  • Parameter (BLDTYP)
  • Parameter (BLDPHI)
  • Parameter (BLDPSI)
  • Parameter (BLDOME)
  • Parameter (HELIX)
  • Parameter (SHEET)
• Other building related options
  • Moving helices through space (SETPOS)
• Activating more commands (MORE)