Index for SOLVE manual

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• a_b_to_f_phi
  • misc.html (math)
  • misc.html (script for math)
• abbreviate
  • intro.html (commands)
• abbreviating
  • intro.html (commands)
• absolute
  • scale_mad.html
• acceptance
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • different.html
  • next.html (addsolve)
  • notes/solve_brief_examples.html (beta-catenin)
• acentrics
  • misc.html (weights)
• acl
  • all_keywords.html (heavy_control)
• addsolve
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • next.html
  • next.html (addsolve)
• alias
  • all_commands.html
  • intro.html (commands)
• aliases
  • intro.html (commands)
• alternate
  • all_commands.html
• alternatives
  • notes/solve_brief_examples.html (gene 5 protein)
• analyze_mad
  • all_keywords.html (file_names)
  • all_commands.html
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • generate.html
• analyze_mir
  • all_keywords.html (file_names)
  • all_commands.html
  • analyze_mir.html
  • analyze_mir.html (script-analyze_mir)
  • generate.html
• analyze_solve
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • next.html
  • next.html (analyze_solve)
• analyzes
  • scoring.html
• anatscale
  • all_keywords.html (heavy_control)
• ancut
  • all_keywords.html (read_reject)
  • localscale.html (keywords for localscale)
• angle
  • all_keywords.html (heavy_control)
  • madbst.html (output)
• anisotropic
  • all_keywords.html (solve_control)
  • all_keywords.html (atom_input)
  • new.html
• ano
  • all_keywords.html (column_numbers)
  • binary.html (dorgbn files)
  • heavy.html (statistical output)
  • localscale.html
  • localscale.html (more on localscale)
• anofourier
  • maps.html
  • maps.html (keywords for maps)
• anom
  • all_keywords.html (heavy_control)
  • all_commands.html
  • formats.html
  • madbst.html (how madbst works)
• anomalous
  • all_keywords.html (column_numbers)
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • analyze_mad.html
  • analyze_mir.html
• anomalous difference
  • all_keywords.html (column_numbers)
  • analyze_mad.html
  • analyze_mir.html
  • formats.html
  • heavy.html (statistical output)
• anomalous differences
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • analyze_mad.html
  • analyze_mir.html
  • auto_keywords.html
• anomalous patterson
  • output.html (patt_ano)
• anomalous pattersons
  • analyze_mad.html
• anomalously
  • all_keywords.html (crystal_info)
  • all_keywords.html (scatter)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
• anoonly
  • all_keywords.html (heavy_control)
• anorefine
  • all_keywords.html (heavy_control)
  • auto_keywords.html
• assigned
  • formats.html
• asymmetric unit
  • all_keywords.html (crystal_info)
  • all_commands.html
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
• atomname
  • all_keywords.html (atom_input)
  • analyze_mir.html (script-analyze_mir)
  • auto_keywords.html
  • generate.html
  • heavy.html (mad phasing)
• automated
  • all_keywords.html
  • all_keywords.html (solve_control)
  • all_commands.html
  • auto.html
  • auto_keywords.html
• automatic
  • analyze_mad.html
  • analyze_mir.html
  • heavy.html (statistical output)
  • heavy.html (typical cycle)
  • new.html
• aval
  • all_keywords.html (scatter)
  • all_keywords.html (atom_input)
  • auto_keywords.html
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
• aval_mad
  • analyze_mad.html (keywords-analyze_mad)
  • madbst.html (keywords)
  • madmrg.html (keywords)
• avg_omit
  • all_commands.html
  • maps.html
  • maps.html (omit_map)
  • maps.html (avg_omit)
  • table-of-contents.html
• bar
  • intro.html (symmetry)
• bayes
  • all_keywords.html (solve_control)
  • analyze_mad.html (keywords-analyze_mad)
  • madbst.html (how madbst works)
  • solve.html (solve_script_mir)
• bayesian
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
• beta
  • all_keywords.html (crystal_info)
  • all_keywords.html (generate)
  • auto_keywords.html
  • fdiff.html
  • generate.html
• bfactor
  • all_keywords.html (read_reject)
  • generate.html
  • localscale.html (keywords for localscale)
• bijvoet
  • scale_mad.html
• bmax
  • all_keywords.html (heavy_control)
• bmin
  • all_keywords.html (heavy_control)
• boss
  • import_export.html (ffttoccp4)
  • maps.html (keywords for maps)
  • maps.html (peaksearch)
• bossfile
  • import_export.html (ffttoboss)
  • maps.html
  • maps.html (keywords for maps)
• bossgrid
  • all_keywords.html (grids)
  • import_export.html (ffttoccp4)
  • import_export.html (script for ffttomapview)
  • import_export.html (keywords for ffttomapview)
• bother
  • hassp.html (more about hassp)
• btof
  • all_commands.html
  • import_export.html
  • import_export.html (btof-ftob)
• bval
  • all_keywords.html (scatter)
  • all_keywords.html (atom_input)
  • auto_keywords.html
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
• bval_mad
  • analyze_mad.html (keywords-analyze_mad)
  • madbst.html (keywords)
  • madmrg.html (keywords)
• bvalue
  • all_keywords.html (scatter)
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • generate.html
• came
  • output.html (patt_ano)
• ccp4
  • all_keywords.html (file_names)
  • all_commands.html
  • formats.html
  • import_export.html (ffttoccp4)
  • intro.html (solvedir)
• ccp4_map
  • next.html
  • output.html
  • output.html (solve_ccp4)
• ccp4_open
  • auto.html (run)
  • intro.html (solvedir)
• ccp4mapfile
  • all_keywords.html (file_names)
  • import_export.html (ffttoccp4)
• ccx100
  • notes/solve_brief_examples.html (gene 5 protein)
  • notes/solve_brief_examples.html (beta-catenin)
  • notes/solve_brief_examples.html (gmcsf)
• cell
  • all_keywords.html
  • all_keywords.html (crystal_info)
  • all_keywords.html (generate)
  • all_commands.html
  • auto.html
• cell_derivative
  • all_keywords.html (generate)
  • generate.html
• cells
  • hassp.html (more about hassp)
  • intro.html (symmetry)
  • maps.html (keywords for maps)
• centered
  • intro.html (symmetry)
• centering
  • intro.html (symmetry)
• centric
  • heavy.html (refinement)
  • heavy.html (statistical output)
  • heavy.html (correlated phasing)
  • misc.html (weights)
• centrosymmetric
  • all_keywords.html (solve_control)
  • auto_keywords.html
• checksolve
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • generate.html
  • next.html (addsolve)
• cleaning
  • all_keywords.html (control)
• cols
  • filemerge.html (script)
  • localscale.html (merge)
• column
  • all_keywords.html
  • all_keywords.html (column_numbers)
  • all_keywords.html (heavy_control)
  • binary.html (dorgbn files)
  • fdiff.html
• columns
  • all_keywords.html (read_reject)
  • all_commands.html
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • analyze_mir.html
• combine_all_data
  • all_keywords.html (solve_control)
  • all_commands.html
  • combine.html
• combined
  • all_commands.html
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
  • combine.html
  • madbst.html (keywords)
• compare_soln
  • all_commands.html
  • misc.html
  • misc.html (compare_soln)
  • table-of-contents.html
• comparisonfile
  • all_keywords.html (file_names)
  • generate.html
  • notes/solve_brief_examples.html (gene 5 protein)
  • notes/solve_brief_examples.html (gmcsf)
• compress
  • heavy.html (mad phasing)
• compressed
  • all_keywords.html (solve_control)
  • analyze_mad.html (keywords-analyze_mad)
  • solve.html
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• compresses
  • how_solve_works.html
• confuse
  • intro.html (symmetry)
• contiguous
  • scoring.html
• conversion
  • import_export.html (btof-ftob)
  • import_export.html (ffttoboss)
  • import_export.html (script for ffttomapview)
  • madmrg.html
  • misc.html (script for math)
• conversions
  • misc.html (math)
• convert
  • all_commands.html
  • binary.html (map)
  • heavy.html (mad phasing)
  • import_export.html
  • import_export.html (btof-ftob)
• coordinatefile
  • all_keywords.html (generate)
  • generate.html
• coordinates
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • all_keywords.html (hassp)
  • all_keywords.html (generate)
  • auto_keywords.html
• coords
  • generate.html
  • maps.html (rho)
• correlated
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • combine.html
  • heavy.html
• correlation
  • analyze_mad.html
  • analyze_mir.html
  • fdiff.html
  • generate.html
  • heavy.html (correlated phasing)
• correlations
  • analyze_mad.html
  • analyze_mir.html
  • heavy.html (correlated phasing)
• correlphase
  • all_keywords.html (heavy_control)
  • heavy.html (correlated phasing)
• criterion
  • solve.html
• cross vector
  • all_keywords.html (hassp)
  • hassp.html (more about hassp)
• cross vectors
  • all_keywords.html (hassp)
  • hassp.html (more about hassp)
  • hassp.html (analyzing a solution)
  • notes/solve_brief_examples.html (gene 5 protein)
  • notes/solve_brief_examples.html (beta-catenin)
• cshrc
  • intro.html (solvedir)
• cutoff
  • different.html
  • misc.html (compare_soln)
• cutoff_deriv
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • different.html
• cval
  • all_keywords.html (scatter)
  • all_keywords.html (atom_input)
  • auto_keywords.html
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
• cval_mad
  • analyze_mad.html (keywords-analyze_mad)
  • madbst.html (keywords)
  • madmrg.html (keywords)
• damped
  • all_keywords.html (read_reject)
  • localscale.html (keywords for localscale)
• damping
  • all_keywords.html (read_reject)
  • all_keywords.html (heavy_control)
  • localscale.html (keywords for localscale)
• dash
  • intro.html (symmetry)
• dashes
  • intro.html (symmetry)
• databases
  • new.html
• datafile
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • analyze_mir.html
• dataset
  • all_keywords.html (read_reject)
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • all_commands.html
• datasets
  • all_commands.html
  • combine.html
  • different.html
  • fdiff.html
  • generate.html
• de1
  • output.html (patt_ano)
• dec
  • notes/solve_brief_examples.html (gene 5 protein)
  • notes/solve_brief_examples.html (beta-catenin)
  • notes/solve_brief_examples.html (gmcsf)
• delano
  • all_keywords.html (file_names)
  • all_keywords.html (heavy_control)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • analyze_mir.html
• delanom
  • all_commands.html
  • scale_mir.html
• delfano
  • madbst.html (how madbst works)
• delhg
  • formats.html
• deliso
  • madmrg.html (notes)
• delmax
  • maps.html
  • maps.html (keywords for maps)
• denzo
  • formats.html
• deriv
  • all_keywords.html (column_numbers)
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • analyze_mir.html (script-analyze_mir)
  • auto_keywords.html
• derivative
  • all_keywords.html (read_reject)
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
• derivatives
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • combine.html
  • different.html
  • generate.html
• derscale
  • all_keywords.html (atom_input)
• dertemp
  • all_keywords.html (atom_input)
• difference fourier
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • heavy.html
  • heavy.html (typical cycle)
• difference fouriers
  • all_keywords.html (solve_control)
  • how_solve_works.html
  • madbst.html
  • madbst.html (keywords)
  • next.html (analyze_solve)
• difference patterson
  • hassp.html
  • hassp.html (more about hassp)
  • how_solve_works.html
  • madbst.html (keywords)
  • maps.html (keywords for maps)
• difference pattersons
  • analyze_mad.html
  • analyze_mir.html
  • scoring.html
• dimensions
  • all_commands.html
  • formats.html
  • how_solve_works.html
• dismax
  • maps.html (maptoasym)
• dismin
  • maps.html (maptoasym)
• dispersive
  • analyze_mad.html
  • madbst.html (keywords)
  • references.html
• distance
  • maps.html (maptoasym)
• dmax
  • all_keywords.html (crystal_info)
  • auto_keywords.html
  • import_export.html (import)
  • misc.html (math)
• dmin
  • all_keywords.html (crystal_info)
  • auto_keywords.html
  • heavy.html (correlated phasing)
  • import_export.html (import)
  • misc.html (math)
• dorgbn
  • all_commands.html
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • analyze_mir.html
  • analyze_mir.html (script-analyze_mir)
• doubleprime
  • new.html
  • notes/solve_brief_examples.html (gene 5 protein)
• downloading
  • table-of-contents.html
• dph1
  • formats.html
• drgtoxplor
  • all_keywords.html (column_numbers)
  • all_commands.html
  • import_export.html
  • import_export.html (dorgbn-to-xplor)
• drgtoxplr
  • import_export.html (dorgbn-to-xplor)
• ead
  • all_keywords.html (heavy_control)
• eis
  • all_keywords.html (heavy_control)
• elapsed
  • notes/solve_brief_examples.html (gene 5 protein)
  • notes/solve_brief_examples.html (beta-catenin)
  • notes/solve_brief_examples.html (gmcsf)
• email
  • intro.html (help)
• export
  • all_keywords.html (file_names)
  • all_commands.html
  • binary.html (data)
  • import_export.html
  • import_export.html (export)
• exported
  • binary.html (data)
• exportfile
  • all_keywords.html (file_names)
  • next.html (analyze_solve)
• exporting
  • binary.html (data)
  • binary.html (map)
  • import_export.html
  • intro.html (data_files)
  • output.html (export)
• ezd
  • all_keywords.html (file_names)
  • generate.html
  • import_export.html (ffttoboss)
  • import_export.html (ffttoccp4)
  • intro.html
• ezd_draw
  • import_export.html (ffttoboss)
  • output.html (solve_ezd)
• ezdgrid
  • all_keywords.html (grids)
  • auto_keywords.html
  • import_export.html (ffttoboss)
  • intro.html (scripts)
• ezdmapfile
  • all_keywords.html (file_names)
  • import_export.html (ffttoboss)
• ezdnew
  • all_commands.html
• f_phi_to_a_b
  • misc.html (math)
• fairly
  • notes/solve_brief_examples.html (gene 5 protein)
• fbar
  • all_keywords.html (read_reject)
  • all_keywords.html (file_names)
  • all_keywords.html (column_numbers)
  • all_commands.html
  • analyze_mad.html
• fcalc
  • all_keywords.html (column_numbers)
  • fdiff.html
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
  • misc.html (weights)
• fder
  • all_keywords.html (heavy_control)
  • binary.html (dorgbn files)
  • heavy.html (statistical output)
  • localscale.html (more on localscale)
  • madmrg.html (notes)
• fderiv
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
  • madmrg.html (notes)
• fdiff
  • all_keywords.html (column_numbers)
  • all_commands.html
  • fdiff.html
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
• fewer
  • heavy.html (typical cycle)
• fft
  • all_keywords.html
  • all_keywords.html (file_names)
  • all_keywords.html (grids)
  • all_commands.html
  • auto_keywords.html
• fftfile
  • all_keywords.html (file_names)
  • hassp.html (script for hassp)
  • import_export.html (ffttoboss)
  • import_export.html (ffttoccp4)
  • import_export.html (script for ffttomapview)
• fftgrid
  • all_keywords.html (hassp)
  • all_keywords.html (grids)
  • auto_keywords.html
  • hassp.html (analyzing a solution)
  • import_export.html (ffttoboss)
• ffttoboss
  • maps.html
  • maps.html (keywords for maps)
  • maps.html (keywords for peaksearch)
• ffttoccp4
  • all_commands.html
  • import_export.html (ffttoezd)
  • import_export.html (ffttoccp4)
• ffttoccp4is
  • import_export.html (ffttoccp4)
• ffttoezd
  • all_commands.html
  • binary.html (map)
  • import_export.html
  • import_export.html (ffttoezd)
  • import_export.html (ffttoboss)
• ffttomapview
  • all_commands.html
  • import_export.html
  • import_export.html (ffttoezd)
  • import_export.html (ffttoccp4)
  • import_export.html (script for ffttomapview)
• fhbar
  • all_keywords.html (heavy_control)
• fhg
  • formats.html
• filemerge
  • all_commands.html
  • fdiff.html
  • filemerge.html
  • filemerge.html (script)
  • import_export.html (import)
• fileout
  • filemerge.html (script)
• filetitle
  • all_keywords.html (file_names)
  • import_export.html (ffttoboss)
  • localscale.html (keywords for localscale)
• fixscattfactors
  • all_keywords.html (scatter)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • different.html
• fmin
  • all_keywords.html (heavy_control)
• fminu
  • all_keywords.html (column_numbers)
  • localscale.html (keywords for localscale)
• fminus
  • all_keywords.html (column_numbers)
  • madmrg.html (keywords)
• fminusfile
  • misc.html (math)
• fnat
  • all_keywords.html (heavy_control)
  • analyze_mir.html
  • analyze_mir.html (script-analyze_mir)
  • heavy.html (refinement)
  • heavy.html (statistical output)
• fnative
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
  • madmrg.html (notes)
  • output.html (solve_mtz)
  • output.html (phases-hl_export)
• fobs_sig_from_f_err
  • misc.html (math)
• fofc
  • maps.html
  • maps.html (keywords for maps)
  • misc.html (script for weights)
• fold
  • hassp.html (more about hassp)
• fommin
  • all_keywords.html (heavy_control)
• formats
  • binary.html
  • binary.html (map)
  • formats.html
  • import_export.html
  • intro.html (data_files)
• formatted
  • all_keywords.html (file_names)
  • all_commands.html
  • auto.html (run)
  • import_export.html
  • import_export.html (import)
• formatting
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • scale_mir.html
  • scale_native.html (script-scale_native)
• fourcofile
  • maps.html (keywords for maps)
• fourier
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • all_keywords.html (maps)
  • all_commands.html
  • auto_keywords.html
• fp_or_fm
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • different.html
  • misc.html (getanom)
  • scale_mir.html
• fpfm_only
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • different.html
  • misc.html (getanom)
  • scale_mir.html
• fph1
  • formats.html
• fph2
  • formats.html
• fphbar
  • all_keywords.html (heavy_control)
• fplus
  • all_keywords.html (column_numbers)
  • localscale.html (keywords for localscale)
  • madmrg.html (keywords)
• fplusfile
  • misc.html (math)
• fprimv
  • all_keywords.html (scatter)
  • analyze_mir.html (script-analyze_mir)
  • auto_keywords.html
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
• fprimv_mad
  • all_keywords.html (scatter)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • generate.html
• fprprv
  • all_keywords.html (scatter)
  • analyze_mir.html (script-analyze_mir)
  • auto_keywords.html
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
• fprprv_mad
  • all_keywords.html (scatter)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • generate.html
• fractional
  • all_keywords.html (atom_input)
  • all_keywords.html (hassp)
  • auto_keywords.html
  • maps.html (keywords for maps)
  • maps.html (peaksearch)
• fsigmin
  • all_keywords.html (heavy_control)
• full_inverse
  • all_keywords.html (solve_control)
• generate
  • all_keywords.html
  • all_keywords.html (generate)
  • all_commands.html
  • auto.html (run)
  • fdiff.html
• generate_mad
  • all_commands.html
  • generate.html
• generate_mir
  • all_keywords.html (generate)
  • all_commands.html
  • generate.html
• generated
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • fdiff.html
  • generate.html
  • heavy.html
• genf_phi
  • misc.html (math)
• gensolvemad
  • generate.html
• gensolvemir
  • generate.html
• gerard
  • generate.html
• getanom
  • all_commands.html
  • misc.html
  • misc.html (getanom)
  • table-of-contents.html
• getgroups
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • heavy.html (correlated phasing)
• getiso
  • all_commands.html
  • maps.html (script for maps)
  • misc.html
  • misc.html (getiso)
  • table-of-contents.html
• getphases
  • all_commands.html
  • misc.html
  • misc.html (getphases)
  • table-of-contents.html
• gotoatom
  • all_keywords.html (atom_input)
  • heavy.html (goto)
  • solve.html (solve_script_mir)
• gotoder
  • generate.html
• gotoderiv
  • all_keywords.html (atom_input)
  • analyze_mir.html
  • auto_keywords.html
  • heavy.html (goto)
  • solve.html (solve_script_mir)
• ha_pdb
  • all_commands.html
  • misc.html
  • misc.html (ha_pdb)
  • table-of-contents.html
• hand
  • intro.html
  • solve.html
• handedness
  • misc.html (compare_soln)
  • notes/solve_brief_examples.html
• harker
  • hassp.html (more about hassp)
  • notes/solve_brief_examples.html (gmcsf)
• harvesting
  • new.html
• hassp
  • all_keywords.html
  • all_keywords.html (hassp)
  • all_commands.html
  • hassp.html
  • hassp.html (script for hassp)
• heavy
  • all_keywords.html
  • all_keywords.html (control)
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • all_keywords.html (scatter)
• hkl_view
  • intro.html (data_files)
• hklin
  • formats.html
  • sample_scripts/script_list.html
• hla
  • output.html (solve_mtz)
• hlb
  • output.html (solve_mtz)
• hlc
  • output.html (solve_mtz)
• hld
  • output.html (solve_mtz)
• hour
  • notes/solve_brief_examples.html (gmcsf)
• i_to_f
  • localscale.html (more on merge)
  • misc.html (math)
• iangle
  • all_keywords.html (heavy_control)
• icol
  • filemerge.html
• icrmax
  • all_keywords.html (hassp)
• iegroup
  • all_keywords.html (atom_input)
  • heavy.html (correlated phasing)
• ignore
  • all_keywords.html (hassp)
  • intro.html (commands)
• ignored
  • all_keywords.html (solve_control)
  • all_keywords.html (atom_input)
  • auto_keywords.html
  • import_export.html (import)
  • intro.html (commands)
• ignoring
  • all_keywords.html (hassp)
• ihassplist
  • all_keywords.html (hassp)
• ihassptype
  • all_keywords.html (hassp)
• iheavyproc
  • all_keywords.html (heavy_control)
  • heavy.html (typical cycle)
• ikeepflag
  • localscale.html (merge)
• imadphase
  • all_keywords.html (heavy_control)
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• import
  • all_commands.html
  • binary.html (data)
  • fdiff.html
  • import_export.html
  • import_export.html (import)
• imported
  • binary.html (data)
• importing
  • binary.html (data)
  • binary.html (map)
  • import_export.html
  • import_export.html (import)
  • intro.html (data_files)
• improves
  • new.html
• inanal
  • all_keywords.html (heavy_control)
• inano
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • different.html
  • generate.html
  • misc.html (compare_soln)
• indicate
  • output.html (patt_ano)
• infile
  • all_keywords.html (file_names)
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
  • import_export.html (scripts for import)
  • import_export.html (export)
• ing
  • sample_scripts/script_list.html
• inhend
  • all_keywords.html (heavy_control)
• inold
  • all_keywords.html (heavy_control)
  • heavy.html (typical cycle)
• inosig
  • all_keywords.html (heavy_control)
• inphas
  • all_keywords.html (heavy_control)
  • heavy.html (typical cycle)
• inphase
  • all_keywords.html (heavy_control)
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • heavy.html (typical cycle)
  • solve.html (solve_script_mad)
• inprnt
  • all_keywords.html (heavy_control)
• inresd
  • all_keywords.html (heavy_control)
  • heavy.html (typical cycle)
• installation
  • intro.html (symmetry)
• intensities
  • all_keywords.html (read_reject)
  • all_keywords.html (generate)
  • auto_keywords.html
  • formats.html
  • generate.html
• inverse
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • misc.html (math)
  • scale_mad.html
• inverses
  • all_keywords.html (solve_control)
  • auto_keywords.html
• inversion
  • misc.html (compare_soln)
• irefcy
  • all_keywords.html (heavy_control)
  • heavy.html (typical cycle)
• isignf
  • hassp.html (more about hassp)
• isoano
  • all_keywords.html (heavy_control)
• isofourier
  • maps.html
  • maps.html (keywords for maps)
• isomorphism
  • combine.html
  • generate.html
  • heavy.html (statistical output)
  • heavy.html (correlated phasing)
• isomorphisms
  • combine.html
  • how_solve_works.html
• isomorphous
  • all_keywords.html (heavy_control)
  • analyze_mir.html
  • different.html
  • heavy.html (statistical output)
  • madmrg.html
• isoonly
  • all_keywords.html (heavy_control)
• isymmetry
  • maps.html (keywords for maps)
  • maps.html (keywords for peaksearch)
• jalt
  • all_keywords.html (heavy_control)
  • heavy.html (refinement)
  • heavy.html (typical cycle)
• jcol
  • filemerge.html
• jstd
  • all_keywords.html (column_numbers)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • madmrg.html (keywords)
  • solve.html (solve_script_mad)
• kalt
  • all_keywords.html (heavy_control)
  • heavy.html (refinement)
  • heavy.html (typical cycle)
• kder
  • all_keywords.html (heavy_control)
  • heavy.html (typical cycle)
• keepall
  • all_keywords.html (read_reject)
  • localscale.html (keywords for localscale)
  • localscale.html (keywords for merge)
• kleywegt
  • generate.html
• kout
  • all_keywords.html (file_names)
  • all_keywords.html (heavy_control)
  • heavy.html (typical cycle)
• label
  • all_keywords.html (atom_input)
  • analyze_mad.html
  • analyze_mir.html (script-analyze_mir)
  • madmrg.html (keywords)
  • solve.html (solve_script_mad)
• labin
  • formats.html
  • sample_scripts/script_list.html
• lambda
  • all_keywords.html (atom_input)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • generate.html
• lattice
  • misc.html (math)
• letters
  • formats.html
• library
  • intro.html (solvedir)
  • new.html
• localscale
  • all_keywords.html (read_reject)
  • all_commands.html
  • heavy.html (rejecting data)
  • import_export.html (import)
  • localscale.html
• localscaling
  • how_solve_works.html
  • localscale.html (script for localscale)
• logfile
  • all_keywords.html (control)
  • all_keywords.html (file_names)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • analyze_mir.html (script-analyze_mir)
• login_custom
  • auto.html (run)
• lowercase
  • formats.html
• lsort
  • import_export.html (import)
• lswap
  • import_export.html (import)
• machine
  • import_export.html (ffttoccp4)
• mad
  • all_keywords.html (read_reject)
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • all_commands.html
• mad_atom
  • all_keywords.html (scatter)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • generate.html
• mad_atomname
  • notes/solve_brief_examples.html (gene 5 protein)
• mad_fbar
  • all_keywords.html (file_names)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
  • scale_mad.html
• mad_fpfm
  • all_keywords.html (file_names)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
  • scale_mad.html
• madatom
  • all_keywords.html (atom_input)
• madbst
  • all_keywords.html (file_names)
  • all_commands.html
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
• madbstfile
  • all_keywords.html (file_names)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
• madfbarfile
  • all_keywords.html (file_names)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
  • scale_mad.html
• madfpfmfile
  • all_keywords.html (file_names)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
  • scale_mad.html
• madmrg
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • all_commands.html
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
• madmrgfile
  • all_keywords.html (file_names)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
• madphase
  • all_keywords.html (heavy_control)
  • solve.html (solve_script_mad)
• mailing
  • intro.html (help)
• mapman
  • binary.html (map)
  • generate.html
  • output.html (solve_ezd)
  • output.html (patt_ano)
• maps
  • all_keywords.html
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • all_keywords.html (maps)
  • all_commands.html
• maptoasym
  • all_commands.html
  • maps.html
  • maps.html (maptoasym)
  • table-of-contents.html
• maptoobject
  • all_commands.html
  • maps.html (maptoasym)
• mapview
  • all_keywords.html (file_names)
  • all_keywords.html (grids)
  • all_commands.html
  • import_export.html
  • import_export.html (ffttoccp4)
• mapviewfile
  • all_keywords.html (file_names)
  • import_export.html (script for ffttomapview)
  • import_export.html (keywords for ffttomapview)
  • maps.html
  • maps.html (keywords for maps)
• matters
  • formats.html
• meanings
  • intro.html (symmetry)
• measure
  • scoring.html
• merge
  • all_keywords.html (read_reject)
  • all_commands.html
  • formats.html
  • heavy.html (typical cycle)
  • import_export.html (import)
• merged
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • formats.html
  • import_export.html (import)
  • scale_mad.html
• merging
  • filemerge.html
  • localscale.html
  • localscale.html (merge)
  • localscale.html (keywords for merge)
  • table-of-contents.html
• meritx100
  • notes/solve_brief_examples.html (gene 5 protein)
  • notes/solve_brief_examples.html (beta-catenin)
  • notes/solve_brief_examples.html (gmcsf)
• mhz
  • notes/solve_brief_examples.html (gene 5 protein)
  • notes/solve_brief_examples.html (beta-catenin)
  • notes/solve_brief_examples.html (gmcsf)
• min
  • notes/solve_brief_examples.html (gene 5 protein)
• mir
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • all_commands.html
  • analyze_mir.html
  • analyze_mir.html (script-analyze_mir)
• mir_fbar
  • analyze_mir.html
  • analyze_mir.html (script-analyze_mir)
  • scale_mir.html
  • solve.html (solve_script_mir)
• mir_fpfm
  • scale_mir.html
• mirfbarfile
  • analyze_mir.html (script-analyze_mir)
  • scale_mir.html
• mirfpfmfile
  • scale_mir.html
• mosflm
  • intro.html (data_files)
• mtz
  • formats.html
  • intro.html (data_files)
  • new.html
  • output.html
  • output.html (solve_mtz)
• mtzdump
  • formats.html
• mtzutils
  • formats.html
• nanof
  • all_keywords.html (column_numbers)
  • localscale.html (keywords for localscale)
• nanomalous
  • all_keywords.html (crystal_info)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • different.html
• nanos
  • all_keywords.html (column_numbers)
  • localscale.html (keywords for localscale)
• natfourier
  • maps.html
  • maps.html (keywords for maps)
  • notes/solve_brief_examples.html (gene 5 protein)
  • notes/solve_brief_examples.html (beta-catenin)
  • notes/solve_brief_examples.html (gmcsf)
• native
  • all_keywords.html (read_reject)
  • all_keywords.html (file_names)
  • all_keywords.html (column_numbers)
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
• native_f
  • scale_mir.html
  • scale_native.html
  • scale_native.html (script-scale_native)
• nbst
  • all_keywords.html (heavy_control)
• ncol
  • binary.html (dorgbn files)
  • import_export.html (dorgbn files)
  • madbst.html (output)
• ncola
  • misc.html (math)
• ncolb
  • misc.html (math)
• ncoldelf
  • all_keywords.html (column_numbers)
  • madbst.html (keywords)
  • madmrg.html (keywords)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• ncolf
  • maps.html (keywords for maps)
  • misc.html (math)
• ncolf_merge
  • all_keywords.html (column_numbers)
  • localscale.html (merge)
  • localscale.html (keywords for merge)
• ncolfa
  • maps.html (keywords for maps)
  • misc.html (getphases)
• ncolfb
  • maps.html (keywords for maps)
  • misc.html (getphases)
• ncolfbar
  • all_keywords.html (column_numbers)
  • madbst.html (keywords)
  • madmrg.html (keywords)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• ncolfc
  • all_keywords.html (column_numbers)
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
  • maps.html (keywords for maps)
  • misc.html (script for weights)
• ncolfcmut
  • all_keywords.html (column_numbers)
  • fdiff.html (keywords for fdiff)
• ncolfhcos
  • madbst.html (keywords)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• ncolfhsin
  • madbst.html (keywords)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• ncolfigm
  • maps.html
• ncolfm
  • misc.html (getanom)
• ncolfminus
  • all_keywords.html (column_numbers)
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
• ncolfobs
  • maps.html (keywords for maps)
• ncolfomut
  • all_keywords.html (column_numbers)
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
• ncolfowt
  • all_keywords.html (column_numbers)
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
  • misc.html (script for weights)
  • misc.html (keywords for weights)
• ncolfp
  • misc.html (getanom)
• ncolfplus
  • all_keywords.html (column_numbers)
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
• ncoli
  • misc.html (math)
• ncolpatt
  • maps.html (keywords for maps)
  • maps.html (script for maps)
• ncolpattsig
  • maps.html
  • maps.html (keywords for maps)
• ncolphi
  • maps.html (keywords for maps)
  • misc.html (math)
• ncolrtest
  • all_keywords.html (column_numbers)
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
  • misc.html (script for weights)
  • misc.html (keywords for weights)
• ncolsdelf
  • all_keywords.html (column_numbers)
  • madbst.html (keywords)
  • madmrg.html (keywords)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• ncolsfbar
  • all_keywords.html (column_numbers)
  • madbst.html (keywords)
  • madmrg.html (keywords)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• ncolsfm
  • misc.html (getanom)
• ncolsfomut
  • fdiff.html (script for fdiff)
• ncolsfp
  • misc.html (getanom)
• ncolsig
  • misc.html (math)
• ncolsig_merge
  • all_keywords.html (column_numbers)
  • localscale.html (merge)
  • localscale.html (keywords for merge)
• ncolsigi
  • misc.html (math)
• ncolsigminus
  • all_keywords.html (column_numbers)
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
• ncolsigplus
  • all_keywords.html (column_numbers)
  • heavy.html (mad phasing)
  • solve.html (solve_script_mad)
• ncolsmut
  • all_keywords.html (column_numbers)
  • fdiff.html (keywords for fdiff)
• ncolswt
  • all_keywords.html (column_numbers)
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
  • misc.html (script for weights)
  • misc.html (keywords for weights)
• ncycle
  • all_keywords.html (heavy_control)
  • heavy.html (typical cycle)
• nderf
  • all_keywords.html (column_numbers)
  • localscale.html (script for localscale)
  • localscale.html (keywords for localscale)
  • maps.html (script for maps)
  • misc.html (getiso)
• nders
  • all_keywords.html (column_numbers)
  • localscale.html (script for localscale)
  • localscale.html (keywords for localscale)
  • maps.html (script for maps)
  • misc.html (getiso)
• negativeonly
  • maps.html (keywords for peaksearch)
• neighbors
  • localscale.html (more on localscale)
• nequiv
  • hassp.html (more about hassp)
• nequiv_separate
  • misc.html (math)
• new_dataset
  • all_keywords.html (solve_control)
  • all_commands.html
  • combine.html
• newatomtype
  • all_keywords.html (scatter)
  • all_keywords.html (atom_input)
  • analyze_mir.html (script-analyze_mir)
  • auto_keywords.html
  • generate.html
• newezd
  • all_keywords.html (grids)
  • auto.html (run)
  • auto_keywords.html
  • binary.html (map)
  • generate.html
• newfile
  • all_keywords.html (file_names)
  • heavy.html
• newscriptfile
  • all_keywords.html (file_names)
  • next.html (analyze_solve)
• nfigm
  • all_keywords.html (heavy_control)
  • maps.html (keywords for maps)
• nfile
  • filemerge.html
• nfiles
  • localscale.html (keywords for merge)
• nlist
  • intro.html (commands)
  • intro.html (data_files)
  • maps.html (keywords for maps)
  • maps.html (keywords for peaksearch)
• nmaps
  • maps.html (avg_omit)
• nmp
  • all_keywords.html (heavy_control)
• nnatf
  • all_keywords.html (column_numbers)
  • all_keywords.html (heavy_control)
  • localscale.html (script for localscale)
  • localscale.html (keywords for localscale)
  • localscale.html (complete)
• nnatf_deriv
  • all_keywords.html (heavy_control)
• nnats
  • all_keywords.html (column_numbers)
  • all_keywords.html (heavy_control)
  • localscale.html (script for localscale)
  • localscale.html (keywords for localscale)
  • localscale.html (complete)
• nnats_deriv
  • all_keywords.html (heavy_control)
• no_anisotropic_b
  • all_keywords.html (solve_control)
• no_duplicate_sites
  • all_keywords.html (solve_control)
• no_fom
  • all_keywords.html (solve_control)
• no_fourier
  • all_keywords.html (solve_control)
• no_native_fourier
  • all_keywords.html (solve_control)
• no_patterson
  • all_keywords.html (solve_control)
• noanorefine
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • different.html
  • notes/solve_brief_examples.html (gmcsf)
• nobayes
  • all_keywords.html (solve_control)
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • heavy.html (statistical output)
  • notes/solve_brief_examples.html (gene 5 protein)
• nobfactor
  • all_keywords.html (read_reject)
  • localscale.html (keywords for localscale)
• nodamping
  • all_keywords.html (read_reject)
  • localscale.html (keywords for localscale)
• noinano
  • different.html
  • scale_mir.html
• noinphase
  • all_keywords.html (heavy_control)
  • auto_keywords.html
• noise
  • hassp.html (more about hassp)
  • scoring.html
• noisy
  • notes/solve_brief_examples.html (gene 5 protein)
• nolog
  • all_commands.html
• none
  • all_keywords.html (heavy_control)
  • generate.html
• nooverallscale
  • all_keywords.html (read_reject)
  • localscale.html (keywords for localscale)
• norefinescale
  • all_keywords.html (heavy_control)
  • madmrg.html (notes)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• normalized
  • status.html
• nrep
  • all_keywords.html (heavy_control)
  • heavy.html (typical cycle)
• nres
  • all_keywords.html (crystal_info)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • different.html
• nseedsolve
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • different.html
  • intro.html (commands)
• nseedtest
  • all_keywords.html (solve_control)
  • auto_keywords.html
• nset
  • localscale.html (merge)
• nshells
  • all_keywords.html (control)
  • analyze_mad.html (keywords-analyze_mad)
  • analyze_mir.html (script-analyze_mir)
  • localscale.html (keywords for localscale)
  • localscale.html (keywords for merge)
• nsignf
  • all_keywords.html (hassp)
• nskip
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • scale_mir.html
  • scale_native.html (script-scale_native)
• nsolsite
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • different.html
  • generate.html
  • next.html (addsolve)
• nsolsite_deriv
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • different.html
• nsym
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • hassp.html (more about hassp)
  • scale_mir.html
  • scale_native.html (script-scale_native)
• ntol_site
  • all_keywords.html (solve_control)
  • auto_keywords.html
• ntol_soln
  • all_keywords.html (solve_control)
  • auto_keywords.html
• ntopderiv
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • intro.html (commands)
• ntopfour
  • all_keywords.html (solve_control)
  • auto_keywords.html
• ntophassp
  • all_keywords.html (hassp)
• ntopsolve
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • different.html
  • intro.html (commands)
  • solve.html (solve_script_mir)
• numbr
  • hassp.html (more about hassp)
• nxplorf
  • all_keywords.html (column_numbers)
  • import_export.html (dorgbn-to-xplor)
• nxplorsig
  • all_keywords.html (column_numbers)
  • import_export.html (dorgbn-to-xplor)
• occ
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • generate.html
  • heavy.html (typical cycle)
  • notes/solve_brief_examples.html (gene 5 protein)
• occup
  • notes/solve_brief_examples.html (gene 5 protein)
  • notes/solve_brief_examples.html (beta-catenin)
  • notes/solve_brief_examples.html (gmcsf)
• occupancies
  • different.html
  • heavy.html (mad phasing)
  • heavy.html (refinement)
  • heavy.html (typical cycle)
  • scoring.html
• occupancy
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • generate.html
  • heavy.html (typical cycle)
• omit
  • all_commands.html
  • maps.html (omit_map)
  • maps.html (avg_omit)
  • table-of-contents.html
• omit_map
  • maps.html
  • maps.html (omit_map)
  • maps.html (avg_omit)
  • table-of-contents.html
• operate
  • all_commands.html
• optimizing
  • notes/solve_brief_examples.html (gene 5 protein)
• origin
  • all_keywords.html (heavy_control)
  • analyze_mad.html
  • analyze_mir.html
  • generate.html
  • hassp.html (more about hassp)
• origin_removed
  • maps.html
• origin_removed_patt
  • maps.html (keywords for maps)
• origins
  • heavy.html (typical cycle)
• outfile
  • all_keywords.html (file_names)
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
  • import_export.html (export)
  • import_export.html (btof-ftob)
• outliers
  • localscale.html (merge)
• overallscale
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • localscale.html (keywords for localscale)
  • scale_mir.html
  • scale_native.html (script-scale_native)
• overwriting
  • intro.html (solvedir)
  • new.html
• p2_m
  • intro.html (symmetry)
• patpk
  • all_keywords.html (hassp)
• patt_ano_orig_removed_der1
  • output.html
  • output.html (patt_ano)
• patt_fa
  • output.html
  • output.html (patt_ano)
• patt_iso_orig_removed_der1
  • output.html
  • output.html (patt_ano)
• patterson
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • all_keywords.html (hassp)
  • all_keywords.html (maps)
• pattersons
  • all_keywords.html (solve_control)
  • analyze_mad.html
  • analyze_mir.html
  • analyze_mir.html (script-analyze_mir)
  • auto_keywords.html
• pattfftfile
  • madbst.html (keywords)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• pattgrid
  • all_keywords.html (grids)
  • auto_keywords.html
  • import_export.html (ffttoboss)
  • import_export.html (keywords for ffttomapview)
  • intro.html (scripts)
• pdb
  • all_keywords.html (generate)
  • all_commands.html
  • auto.html (run)
  • generate.html
  • intro.html
• peakfile
  • maps.html
  • maps.html (keywords for maps)
  • maps.html (script for peaksearch)
  • maps.html (keywords for peaksearch)
• peaksearch
  • all_commands.html
  • heavy.html (typical cycle)
  • maps.html
  • maps.html (peaksearch)
  • maps.html (script for peaksearch)
• peaksearching
  • table-of-contents.html
• percent_error
  • all_keywords.html (generate)
  • generate.html
• phasefile
  • all_keywords.html (file_names)
  • next.html (analyze_solve)
• phases
  • all_keywords.html (file_names)
  • all_keywords.html (heavy_control)
  • heavy.html
  • heavy.html (mad phasing)
  • heavy.html (statistical output)
• phasing
  • all_keywords.html
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
• phib
  • output.html (solve_mtz)
• phibest
  • all_keywords.html (heavy_control)
• phimostprobable
  • all_keywords.html (heavy_control)
• poorly
  • all_keywords.html (solve_control)
• positiveonly
  • maps.html (keywords for peaksearch)
• preferences
  • all_commands.html
• premerged
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • formats.html
  • generate.html
  • scale_mir.html
• prime
  • new.html
• progress
  • notes/solve_brief_examples.html
• properly
  • sample_scripts/script_list.html
• ratio
  • all_keywords.html (read_reject)
  • all_keywords.html (heavy_control)
  • all_keywords.html (hassp)
  • analyze_mad.html
  • auto_keywords.html
• ratmin
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • different.html
  • fdiff.html
  • fdiff.html (keywords for fdiff)
• rawderivfile
  • all_keywords.html (file_names)
  • auto_keywords.html
  • generate.html
  • scale_mir.html
  • notes/solve_brief_examples.html (gmcsf)
• rawmadfile
  • all_keywords.html (file_names)
  • auto_keywords.html
  • generate.html
  • scale_mad.html
  • notes/solve_brief_examples.html (gene 5 protein)
• rawmadfiles
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • scale_mir.html
  • scale_native.html (script-scale_native)
• rawmirfile
  • scale_mir.html
• rawnativefile
  • all_keywords.html (file_names)
  • auto_keywords.html
  • generate.html
  • scale_mir.html
  • scale_native.html (script-scale_native)
• read_amplitudes
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • formats.html
  • scale_mad.html
  • scale_mir.html
• read_intensities
  • formats.html
  • scale_mir.html
  • scale_native.html (script-scale_native)
  • notes/solve_brief_examples.html (gene 5 protein)
  • sample_scripts/script_list.html
• read_intensitites
  • all_keywords.html (read_reject)
  • auto_keywords.html
• readdenzo
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • formats.html
  • scale_mir.html
  • scale_native.html (script-scale_native)
• readformatted
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • formats.html
  • generate.html
  • scale_mad.html
• readtrek
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • formats.html
  • notes/solve_brief_examples.html (gene 5 protein)
  • sample_scripts/script_list.html
• references
  • references.html
  • table-of-contents.html
• refine
  • all_keywords.html (scatter)
  • all_keywords.html (heavy_control)
  • all_commands.html
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
• refineall
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • heavy.html (typical cycle)
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• refineb
  • all_keywords.html (heavy_control)
• refined
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • fdiff.html
  • heavy.html (mad phasing)
  • heavy.html (typical cycle)
• refinement
  • all_keywords.html
  • all_keywords.html (control)
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • all_commands.html
• refinenone
  • all_keywords.html (heavy_control)
  • auto_keywords.html
  • heavy.html (mad phasing)
  • heavy.html (goto)
• refineocc
  • all_keywords.html (heavy_control)
• refineoccb
  • all_keywords.html (heavy_control)
• refinetemp
  • all_keywords.html (heavy_control)
• refinex
  • all_keywords.html (heavy_control)
• refinexyz
  • all_keywords.html (heavy_control)
• refinexyzb
  • heavy.html (goto)
• refiney
  • all_keywords.html (heavy_control)
• refinez
  • all_keywords.html (heavy_control)
• refscattfactors
  • all_keywords.html (scatter)
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • different.html
  • madmrg.html (keywords)
• reject
  • all_keywords.html (read_reject)
  • heavy.html (rejecting data)
  • localscale.html (keywords for localscale)
  • localscale.html (merge)
• rejected
  • hassp.html (more about hassp)
  • localscale.html (more on merge)
  • madbst.html (how madbst works)
• rejecting
  • all_keywords.html
  • all_keywords.html (read_reject)
  • heavy.html
  • heavy.html (rejecting data)
• rejects
  • localscale.html (merge)
  • localscale.html (more on merge)
• remove
  • formats.html
• reported
  • scoring.html
• rescales
  • scale_mad.html
• residual
  • all_keywords.html (heavy_control)
  • heavy.html (statistical output)
  • madbst.html (how madbst works)
• residuals
  • all_keywords.html (heavy_control)
  • heavy.html
  • heavy.html (statistical output)
  • heavy.html (correlated phasing)
  • heavy.html (typical cycle)
• residues
  • all_keywords.html (crystal_info)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • auto_keywords.html
  • generate.html
• resolution
  • all_keywords.html
  • all_keywords.html (crystal_info)
  • all_keywords.html (solve_control)
  • all_keywords.html (heavy_control)
  • auto.html
• resolution_steps
  • all_keywords.html (solve_control)
  • how_solve_works.html
• resolutions
  • hassp.html (more about hassp)
• rho
  • all_commands.html
  • binary.html (map)
  • maps.html
  • maps.html (rho)
  • table-of-contents.html
• save
  • all_keywords.html (control)
• save_files
  • all_keywords.html (control)
• scale_derivative
  • all_keywords.html (read_reject)
  • auto_keywords.html
• scale_mad
  • all_keywords.html (read_reject)
  • all_keywords.html (file_names)
  • all_commands.html
  • analyze_mad.html
  • auto_keywords.html
• scale_mir
  • all_keywords.html (read_reject)
  • all_commands.html
  • analyze_mir.html
  • generate.html
  • how_solve_works.html
• scale_native
  • all_keywords.html (read_reject)
  • all_commands.html
  • auto_keywords.html
  • generate.html
  • how_solve_works.html
• scaled
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • formats.html
  • heavy.html (mad phasing)
  • import_export.html (ffttoboss)
• scalednativefile
  • scale_mir.html
  • scale_native.html
  • scale_native.html (script-scale_native)
• scalepack
  • all_keywords.html (read_reject)
  • auto.html
  • auto_keywords.html
  • formats.html
  • intro.html
• scaling
  • all_keywords.html
  • all_keywords.html (read_reject)
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • all_commands.html
• scatter
  • sample_scripts/script_list.html
• score
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • different.html
  • new.html
  • output.html (solve_prt)
• scoring
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • different.html
  • next.html (analyze_solve)
  • output.html (solve_prt)
• scoring_table
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • next.html (analyze_solve)
• scratch
  • all_keywords.html (control)
• script
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • analyze_mir.html
• scriptfile
  • analyze_mad.html (keywords-analyze_mad)
  • analyze_mir.html (script-analyze_mir)
• sdiff
  • fdiff.html (keywords for fdiff)
• sdub
  • all_keywords.html (hassp)
• searches
  • all_keywords.html (hassp)
  • hassp.html
  • hassp.html (more about hassp)
  • madbst.html (keywords)
  • table-of-contents.html
• searching
  • hassp.html
  • hassp.html (more about hassp)
• searchregion
  • all_keywords.html (hassp)
  • hassp.html (analyzing a solution)
• section
  • binary.html (map)
  • intro.html
  • intro.html (data_files)
  • references.html
• seeds
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • different.html
  • intro.html (commands)
  • output.html (solve_prt)
• separateano
  • misc.html (math)
• separates
  • scale_mad.html
• setup
  • analyze_mad.html
  • analyze_mir.html
  • analyze_mir.html (script-analyze_mir)
  • auto.html
  • auto_keywords.html
• shells
  • all_keywords.html (control)
  • analyze_mad.html (keywords-analyze_mad)
  • analyze_mir.html (script-analyze_mir)
  • localscale.html (keywords for localscale)
  • localscale.html (keywords for merge)
• shifts
  • all_keywords.html (heavy_control)
  • hassp.html (more about hassp)
  • misc.html (compare_soln)
• showed
  • notes/solve_brief_examples.html
• sigbar
  • all_keywords.html (heavy_control)
• sigdelhg
  • formats.html
• sigderscale
  • all_keywords.html (atom_input)
• sigdph1
  • formats.html
• sigfp
  • formats.html
  • output.html (solve_mtz)
• sigfph1
  • formats.html
• sighg
  • formats.html
• sigma
  • all_keywords.html (read_reject)
  • all_keywords.html (file_names)
  • all_keywords.html (column_numbers)
  • all_keywords.html (heavy_control)
  • all_commands.html
• sigma_scale
  • misc.html (math)
• sigmas
  • all_keywords.html (atom_input)
  • all_keywords.html (heavy_control)
  • binary.html (dorgbn files)
  • formats.html
  • heavy.html (statistical output)
• signatscale
  • all_keywords.html (heavy_control)
• signif
  • hassp.html (more about hassp)
• significance
  • all_keywords.html (hassp)
  • hassp.html (more about hassp)
• signify
  • filemerge.html
• siras
  • all_keywords.html (file_names)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
  • heavy.html (mad phasing)
• skip
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • scale_mir.html
  • scale_native.html (script-scale_native)
• skipped
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • scale_mir.html
  • scale_native.html (script-scale_native)
• slash
  • intro.html (symmetry)
• slashes
  • intro.html (symmetry)
• soln
  • notes/solve_brief_examples.html (gene 5 protein)
• solve
  • all_keywords.html
  • all_keywords.html (read_reject)
  • all_keywords.html (file_names)
  • all_keywords.html (solve_control)
  • all_keywords.html (scatter)
• solve_combine
  • combine.html
• solve_mad
  • all_keywords.html (file_names)
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • next.html (analyze_solve)
  • output.html (phases-hl_script)
• solve_mir
  • all_keywords.html (file_names)
  • analyze_mir.html
  • analyze_mir.html (script-analyze_mir)
  • next.html (analyze_solve)
  • output.html (phases-hl_script)
• solvedatafile
  • all_keywords.html (file_names)
  • analyze_mad.html (keywords-analyze_mad)
  • binary.html (dorgbn files)
• solvefile
  • generate.html
• ssft
  • all_keywords.html (hassp)
• ssin
  • all_keywords.html (hassp)
• statements
  • formats.html
• statistics
  • all_keywords.html (heavy_control)
  • heavy.html (statistical output)
  • heavy.html (correlated phasing)
  • heavy.html (typical cycle)
  • madbst.html (how madbst works)
• strp
  • all_keywords.html (hassp)
• submission
  • new.html
• superposition
  • hassp.html
• swap
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • import_export.html (import)
  • import_export.html (scripts for import)
• swap_ano
  • all_keywords.html (read_reject)
  • auto_keywords.html
• swapped
  • all_keywords.html (read_reject)
  • auto_keywords.html
• symfile
  • all_keywords.html (crystal_info)
  • all_keywords.html (file_names)
  • auto_keywords.html
  • generate.html
  • intro.html (scripts)
• symmetry
  • all_keywords.html (crystal_info)
  • all_keywords.html (file_names)
  • all_keywords.html (hassp)
  • all_commands.html
  • auto_keywords.html
• temperature
  • all_keywords.html (atom_input)
• tend
  • scoring.html
• thorough
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • different.html
• threshold
  • all_keywords.html (heavy_control)
• toss
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • localscale.html (keywords for localscale)
  • localscale.html (keywords for merge)
  • misc.html (getanom)
• tossbad
  • all_keywords.html (read_reject)
  • heavy.html (rejecting data)
  • localscale.html (keywords for localscale)
  • localscale.html (keywords for merge)
• tossed
  • madbst.html (output)
  • madbst.html (keywords)
  • misc.html (getanom)
• tossing
  • different.html
• translation
  • import_export.html (import)
• trialsite
  • all_keywords.html (hassp)
• unbiased
  • references.html
• uncorrelated
  • heavy.html (correlated phasing)
• underscore
  • intro.html (symmetry)
• underscores
  • intro.html (symmetry)
• unformatted
  • binary.html (dorgbn files)
  • import_export.html (dorgbn files)
• unique
  • hassp.html (more about hassp)
  • hassp.html (analyzing a solution)
  • heavy.html (correlated phasing)
  • intro.html (commands)
  • notes/solve_brief_examples.html (gmcsf)
• unit cell
  • auto.html
  • hassp.html (more about hassp)
  • hassp.html (analyzing a solution)
  • import_export.html (ffttoboss)
  • scoring.html
• units
  • all_keywords.html (solve_control)
  • auto_keywords.html
  • hassp.html (more about hassp)
  • heavy.html (correlated phasing)
  • import_export.html (ffttoboss)
• unknown
  • auto.html (run)
  • intro.html (solvedir)
• unmerged
  • all_keywords.html (read_reject)
  • auto_keywords.html
  • formats.html
  • localscale.html (merge)
  • scale_mir.html
• unscaled
  • how_solve_works.html
• uppercase
  • formats.html
• variables
  • intro.html (solvedir)
• vectorsum
  • misc.html (math)
• verbose
  • all_keywords.html (control)
  • auto_keywords.html
• version
  • intro.html (help)
  • new.html
  • solve.html
  • solve.html (solve_script_mad)
  • solve.html (solve_script_mir)
• versions
  • copyright.html
  • new.html
  • scoring.html
• viewing
  • output.html (solve_ccp4)
• wavelength
  • all_keywords.html (read_reject)
  • all_keywords.html (file_names)
  • all_keywords.html (column_numbers)
  • all_keywords.html (scatter)
  • all_keywords.html (atom_input)
• wavelength?
  • formats.html
• wavelengths
  • analyze_mad.html
  • analyze_mad.html (keywords-analyze_mad)
  • generate.html
  • heavy.html (mad phasing)
  • madbst.html (how madbst works)
• weight
  • fdiff.html
  • fdiff.html (script for fdiff)
  • fdiff.html (keywords for fdiff)
  • madmrg.html (notes)
  • misc.html (weights)
• weighted
  • binary.html (dorgbn files)
  • heavy.html (statistical output)
  • madbst.html (how madbst works)
  • madbst.html (output)
  • madmrg.html (notes)
• weighting
  • all_keywords.html (solve_control)
  • all_commands.html
  • auto_keywords.html
  • fdiff.html
  • heavy.html (refinement)
• weights
  • all_commands.html
  • fdiff.html
  • misc.html
  • misc.html (weights)
  • misc.html (script for weights)
• wilson
  • all_keywords.html (read_reject)
  • localscale.html
  • localscale.html (keywords for localscale)
  • madbst.html (how madbst works)
  • misc.html (math)
• worked
  • new.html
• xplor
  • all_keywords.html (file_names)
  • import_export.html
  • import_export.html (dorgbn-to-xplor)
  • misc.html (script for weights)