Ribbons Software Information page 1 of 2 The "ribbons" software distribution package (the software) for general molecular illustration and for error analysis in protein crystallography is copyrighted 1987-1996 by Mike Carson (the author) and licensed through the University of Alabama at Birmingham (UAB) Center for Macromolecular Crystallography (CMC). The CMC's NASA grant encourages the commercialization of our work. Thus we are selling the program. To receive "ribbons", US-mail or FAX the author the signed ribbons license agreement which follows, and make contact via E-mail. Hopefully we can do all our business on the internet. Our products: Ribbons 2.4 (for SGI workstations running IRIX 4.0.5 or higher) This is the current version of the popular, easy to use and robust software package that has been distributed the last four years. The "ribbons" software package is designed to display molecular models as rendered images. The data required consist of atomic coordinates in Protein Data Bank format and files of color-coding information. Version 2.0 allows the manipulation of complicated smooth shaded images in near real-time. Features include: * Display of multiple chains of proteins and/or nucleic acids * Interactive control of the style and texture of ribbon models * Color coding by a wide variety of biological and geometrical properties, including crystallographic error analysis. * Tools to add color coding from the output of "XPLOR" and "O" and our error analysis routines. * Display of spheres and cylinders with interactivity set radii * Display of triangular and dot surfaces * Interactive control over the colors and the light source * Display of simple animation sequences * Output suitable for use with the WaveFront ray-tracer * Online Help, as well as a comprehensive manual. Protein Crystallographic Error Analysis: A suite of non-graphical programs for error analysis are available for a variety of machines, including VAXen. (Papers upcoming in Acta D.) This package is supplied with "ribbons". Ribbons Software Information page 2 of 2 Unsupported versions of "Ribbons 2.0": An IBM RS/6000 conversion has been made by Mike Tung of NIST. You can get "ribbons-2.0-aix" from anonymous ftp site: ftp://ibm1.carb.nist.gov/pub/ribbons. Opening data connection for ribbons-2.0-aix.tar.gz (5544906 bytes). A version compatable with Gert Vriend's WhatIf is also available. A not so robust and unsupported version exists for the Evans & Sutherland ESV workstations with about 80% of the capabilities. A Sun/PEX version of this may soon be available. Please contact the author for more details. Ribbons 2.5: The IRIS 2.4 version converted to an X/Motif compliant interface and the OpenGL graphics standard will soon be ready for SGI IRIX version 5.2 and higher. Anticipate by fall '94. Ribbons licensees will get this if they want at no extra charge. Ribbons++: A version with all the capabilites of Ribbons 2.5, plus lots of advanced graphics tricks and very high-quality PostScript output is almost ready. This is written in C++ using the object-oriented IRIS Open Inventor 3-D toolkit. Version 1.0 anticipated by fall '96. Full-support ribbons licensees will get the executable version if they want at no extra charge, plus a big discount if the program as I envision it is ever finished. The past and the future: The author first got involved with graphics trying to understand molecular dynamics simulations while working with Jan Hermans at UNC in the early '80s. Much of the organization and style is due to the historical baggage from working with E&S PS300s (ASCII files created for viewing or photography and loaded into the machine for viewing). The BSribbon ('85) program was developed on a PS300. This software has evolved over a long time into its present state. Much is planned for Ribbons++, primarily in the area of user interaction. However, I'm also trying to do some science, with four other projects currently going on in crystallography and structure-based drug design. All information is subject to change without notice and should not be construed as a commitment by the author or the UAB/CMC for further development and support. As long as I am here and healthy, I shall continue to incrementally develop "ribbons" and offer assistance to its users. PS, I'm well-meaning but somewhat absent-minded. If you don't get a response in a reasonable time, please get back to me. Mike Carson University of Alabama at Birmingham Center for Macromolecular Crystallography Dec. 9, 1994