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14. Command Overview

14. 2. Modify Molecules

NewMol

create new molecule

MeanMol

create mean molecule

NameMol

change molecule name

FirstMol

move molecules to front of molecule list

RemoveMol

remove molecules

AddRes

add residue to molecule

ChangeRes

change residue type

RemoveRes

remove residues

AddAtom

add new atom

AddPseudo

add new pseudo atom

FlipAtom

flip atoms for better superposition

RemoveAtom

remove atoms

AddBond

add bond between two atoms

RemoveBond

remove bonds

AddDist

add distance between two atoms

AddHbond

add H-bond between two atoms

AddLol

add lower limit between two atoms

AddUpr

add upper limit between two atoms

RemoveDist

remove distances

AddAngle

add dihedral angle

RotateAngle

rotate dihedral angles

SetAngle

rotate dihedral angles

RemoveAngle

remove angles

AddAco

add angle constraints

RemoveAco

remove angle constraints


MOLMOL Manual - 7 Oct 1997

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