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Contents
ARP/wARP 5
User Guide
September 1998
Contents
General
Introduction
Latest News and Bug Report
Distribution
Acknowledgments
Installing ARP/wARP
Using ARP/wARP
Applications
Model and Data Requirements
Quality of the Initial Model
Quality of the X-ray Data
Limitations
Automated Scripts
Preparing for ARP/wARP
Killing Jobs
Setting Things Up With arp_warp_setup.sh
Using Molecular Replacement Solutions (#1)
Density Modification (#2,#3)
Running ARP/wARP for Auto-Building (#4)
Sequence Docking and Side Chain Building (#4)
Solvent Building (#5)
ARP/wARP and SHELXL (#5)
Ab Initio Solution of Metalloproteins (#6)
ARP/wARP Output Files
Supplementary Use of ARP/wARP
I Hate Automated Scripts
ARP/wARP Keywords
Short Introduction
Examples
The Keywords
You Want More?
On-Line Help
Monitoring and Troubleshooting
Input Processing
Output
Viewing ARP/wARP Log Files
Checking Convergence
Crashing Scripts
Author-Abuse Information
Bibliography
About this document ...
VL AP RM
1998-09-03
ARP/wARP 5