Geometry recognizes two options. These options can be set with the OPTION statement described in the ``Standard TNT Data Statements'' section on Page . As an example, the activation of the VERBOSE option would require the statement
OPTION SET VERBOSE
This option causes the program to ignore all potential bad contacts in all its operations. This is useful in the early refinement of models generated by molecular replacement. One usually prefers to refine the model a bit before model building to fix up the crystal contacts.
The Verbose option causes the program to write additional information to the log file about the choices it makes.