LIGPLOT v.2.0 - Operating manual

A program to plot schematic diagrams of protein-ligand interactions

Contents

• 1. Introduction
• 2. How to run LIGPLOT
• 3. Inputs to LIGPLOT
• 4. Outputs produced by LIGPLOT
• 5. Customizing LIGPLOT - amending the ligplot.par parameter file
• 6. Improving the plots
• 7. Adding/removing H-bonds and hydrophobic interactions

• References

• Appendix A - Brookhaven file format
• Appendix B - LIGPLOT file formats

• Sample plots